About the Book
1. A Practical Guide to Quantitative Interactor Screening with Next-Generation Sequencing (QIS-Seq)
Yunchen Gong, Darrell Desveaux, David S. Guttman, and Jennifer D. Lewis
2. sbv IMPROVER: Modern Approach to Systems Biology
Svetlana Guryanova and Anna Guryanova
3. Mathematical Justification of Expression-Based Pathway Activation Scoring (PAS)
Alexander M. Aliper, Michael B. Korzinkin, Natalia B. Kuzmina, Alexander A. Zenin, Larisa S. Venkova, Philip Yu. Smirnov, Alex A. Zhavoronkov, Anton A. Buzdin, and Nikolay M. Borisov
4. Bioinformatics Meets Biomedicine: OncoFinder, a Quantitative Approach for Interrogating Molecular Pathways Using Gene Expression Data
Anton A. Buzdin, Vladimir Prassolov, Alex A. Zhavoronkov, and Nikolay M. Borisov
5. Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
Mark D'Souza, Dinanath Sulakhe, Sheng Wang, Bing Xie, Somaye Hashemifar, Andrew Taylor, Inna Dubchak, T. Conrad Gilliam, and Natalia Maltsev
6. Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated "Knowledge-Based" Platform
Alex Dubovenko, Yuri Nikolsky, Eugene Rakhmatulin, and Tatiana Nikolskaya
7. Extracting the Strongest Signals from Omics Data: Differentially Expressed Pathways and Beyond
Galina Glazko, Yasir Rahmatallah, Boris Zybailov, and Frank Emmert-Streib
8. Search for Master Regulators in Walking Cancer Pathways Alexander E. Kel
9. Mathematical Modeling of Avidity Distribution and Estimating General Binding Properties of Transcription Factors from Genome-Wide Binding Profiles
Vladimir A. Kuznetsov
10. A Weighted SNP Correlation Network Method for Estimating Polygenic Risk Scores
Morgan E. Levine, Peter Langfelder, and Steve Horvath
11. Analysis of cis-Regulatory Elements in Gene Co-Expression Networks in Cancer
Martin Triska, Alexander Ivliev, Yuri Nikolsky, and Tatiana V. Tatarinova
12. Applying Association Rule Mining Techniquest to Predict Procaryotic Metabolic Pathways
Imane Boudellioua, Rabie Saidi, Robert Hoehndorf, Maria J. Martin, and Victor Solovyev
13. ArrayTrack: An FDA and Public Genomic Tool
Hong Fang, Stephen C. Harris, Zhenjiang Su, Minjun Chen, Feng Qian, Leming Shi, Roger Perkins, and Weida Tong
14. Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments
Alena Zolotarenko, Evgeny Chekalin, Ancha Baranova, Tatiana V. Tatarinova, and Sergey Bruskin
15. Comprehensive Analyses of Tissue-Specific Networks with Implications to Psychiatric Diseases
