Introduction
Section 1. Nonspecific DNA binding: searching DNA and altering DNA properties
1. Mirny -DNA search theory
2. Yan Mei Wang-DNA search, hopping vs. sliding
3. Williams-SSB DNA search
4. Wuite-HN-S proteins or DNA sliding search
5. Barsky-processivity clamp
6. Maher-DNA bending proteins
7. Ansari- kinetics of DNA binding and bending by proteins
8. Record- modes of DNA interaction by architectural proteins
Section 2. Complex protein-DNA interactions
1. Finzi- DNA looping by repressor proteins
2. Ghosh - NF-kappaB transcription factor crystallography
2. van Oijen - Replication complex
3. Morrical - DNA recombination complexes
4. Fried- DNA binding by alkyltransferase repair proteins
5. Beese or Darst- DNA polymerase crystallography
6. Beuning - Polymerase switching in response to DNA damage
7. Leuba - single molecule studies on chromatin
8. Higgs- Regulation of chromosome conformation in cells
9. Widom- nucleosome positioning across genomes