1. Bile Processing Protocol for Improved Proteomic Analysis
Sergio Ciordia, Gloria Alvarez-Sola, María Rullán, Jesús M. Urman, Matías A. Ávila, and Fernando J. Corrales
2. MS-Based Extracellular Vesicles (EVs) Analysis: An Application to Helminth-Secreted EVs
Javier Sotillo
3. Proteomic Profiling of Cerebrospinal Fluid by 16-Plex TMT-Based Mass Spectrometry
Kaushik Kumar Dey, Huan Sun, Zhen Wang, Mingming Niu, Hong Wang, Yun Jiao, Xiaojun Sun, Yuxin Li, and Junmin Peng
4. Data-Independent Acquisition Mass Spectrometry-Based Deep Proteome Analysis for Hydrophobic Proteins from Dried Blood Spots Enriched by Sodium Carbonate Precipitation
Daisuke Nakajima, Osamu Ohara, and Yusuke Kawashima
5. Sample Processing for Metaproteomic Analysis of Human Gut Microbiota
Carmen García-Durán, Raquel Martínez López, Lucía Monteoliva, and Concha Gil
6. Mass Spectrometry-Based Analytical Strategy for Single Cell Proteomics
Ákos Végvári
7. Lysine Acetylation Stoichiometry Analysis at the Proteome Level
Jeovanis Gil and Sergio Encarnación-Guevara
8. Implementation of Clinical Phosphoproteomics and Proteomics for Personalized Medicine
Pedro Casado, Maruan Hijazi, Henry Gerdes, and Pedro R. Cutillas
9. pH/Acetonitrile-Gradient-Reversed-Phase Fractionation of Enriched Hyper-Citrullinated Library in Combination with LC-MS/MS Analysis for Confident Identification of Citrullinated Peptides
Aneta Stachowicz, Niveda Sundararaman, Vidya Venkatraman, Jennifer Van Eyk, and Justyna Fert-Bober
10. Purification of HLA Immunopeptidomes from Human Thymus
Iñaki Alvarez
11. Generation of HLA Allele-Specific Spectral Libraries to Identify and Quantify Immunopeptidomes by SWATH/DIA-MS
David Hamelin, Etienne Caron, and Kevin Kovalchik
12. Immunopeptidomic Analysis of the Phosphopeptidome Displayed by Hla Class I Molecules
Miguel Marcilla
13. Development of a Standardized MRM Method for Quantification of One Carbon Metabolism Enzymes
Laura Guerrero, Alberto Paradela, and Fernando J. Corrales
14. Molecular Histology Analysis of Cryopreserved Tissue Using Peptide/Protein MALDI-TOF Imaging Mass Spectrometry (MALDI-IMS)
Ibon Iloro, Iraide Escobes, Mikel Azkargorta, and Félix Elortza
15. The Human Protein Atlas and Antibody-Based Tissue Profiling in Clinical Proteomics
Borbala Katona and Cecilia Lindskog
16. Microbial Identification in the Clinical Microbiology Laboratory Using MALDI-TO
