1. Identification of Copy Number Variants from SNP Arrays using PennCNV
Li Fang and Kai Wang
2. Using SAAS-CNV to Detect and Characterize Somatic Copy Number Alterations in Cancer Genomes from Next Generation Sequencing and SNP Array Data
Zhongyang Zhang and Ke Hao
3. Statistical Detection of Genome Differences Based on CNV Segments
Yang Zhou, Derek M. Bickhart, and George E. Liu
4. Whole Genome Shotgun Sequence CNV Detection using Read Depth
Fatma Kahveci and Can Alkan
5. Read Depth Analysis to Identify CNV in Bacteria using CNOGpro
Ola Brynildsrud
6. Using HaMMLET for Bayesian Segmentation of WGS read-depth Data John Wiedenhoeft and Alexander Schliep
7. Split-Read InDel and Structural Variant Calling Using PINDEL
Kai Ye, Li Guo, Xiaofei Yang, Eric-Wubbo Lamijer, Keiran Raine, and Zemin Ning
8. Detecting Small Inversions using SRinversion
Ruoyan Chen, Yu Lung Lau, and Wanling Yang
9. Detection of CNVs in NGS data using VS-CNV
Nathan Fortier, Gabe Rudy, and Andreas Scherer
10. Structural Variant Breakpoint Detection with novoBreak
Zechen Chong and Ken Chen
11. Use of RAPTR-SV to Identify SVs from Read Pairing and Split Read Signatures
Derek M. Bickhart
12. Versatile Identification of Copy Number Variants with Canvas
Sergii Ivakhno and Eric Roller
13. Markov Chain Monte Carlo SV Calling with SVelter
Xuefang Zhao
14. Analysis of Population-genetic Properties of Copy Number Variations Lingyang Xu, Yang Liu, Derek M. Bickhart, JunYa Li, and George E. Liu
15. Validation of Genomic Structural Variants through Long Sequencing Technologies
Xuefang Zhao
16. Structural Variation Detection and Analysis using Bionano Optical Mapping
Saki Chan, Ernest Lam, Michael Saghbini, Sven Bocklandt, Alex Hastie, Han Cao, Erik Holmlin, and Mark Borodkin
