Part I: Introduction
1. Two Dimensional Gel Electrophoresis and 2D-DIGE
Paula Meleady
Part II: Difference Gel Electrophoresis
2. Comparative DIGE Proteomics
Kay Ohlendieck
3. 2D-DIGE and Fluorescence Image Analysis
Elisa Robotti and Emilio Marengo
4. DIGE Analysis Software and Protein Identification Approaches
Abduladim Hmmier and Paul Dowling
Part III: DIGE Applications
5. Native DIGE: Efficient Tool to Elucidate Protein Interactomes
Diksha Dani and Norbert Dencher
6. Comparative Two-dimensional Fluorescence Gel Electrophoresis
Doreen Ackermann and Simone König
7. DIGE-based Phosphoproteomic Analysis
Taras Stasyk and Lukas Huber
8. DIGE Saturation Labeling for Scarce Amounts of Protein from Formalin-fixed Paraffin-embedded (FFPE) Tissue
Paul Dowling
9. Comparative 3-sample DIGE Analysis of Skeletal Muscles
Kay Ohlendieck
10. DIGE Analysis of ProteoMiner(TM) Fractionated Serum/Plasma Samples
Sandra Murphy and Paul Dowling
Part IV: Comparative DIGE Tissue Proteomics
11. DIGE Analysis of Human Tissues
Cecilia Gelfi and Daniele Capitanio
12. DIGE Analysis of Animal Tissues
Alessio Di Luca, Ruth Hamill, Anne Maria Mullen, and Giuliano Elia
13. Rapid 2D DIGE Proteomic Analysis of Mouse Liver
Shotaro Kamata and Isao Ishii
14. Proteomic Analysis of Lung Tissue by DIGE
Jarlath Nally and Simone Schuller
15. Comparative Testis Tissue Proteomics using 2-dye versus 3-dye DIGE Analysis
Ashling Holland
16. DIGE Analysis of Fish Tissues
Joanna Nynca, Mariola Dietrich and Andrzej Ciereszko
Part V: Auxillary DIGE Methods
17. Protein Digestion for DIGE Analysis Sandra Murphy and Kay Ohlendieck
18. Subcellular Fractionation for DIGE-based Proteomics
Sandra Murphy
19. DIGE Analysis of Immunodepleted Plasma
Paul Dowling and Kay Ohlendieck
Part VI: DIGE Verification Analysis
20. Elucidating Cellular Metabolism and Protein Difference Data from DIGE Proteomics Experiments using Enzyme Assays
Andrew Dowd
21. Enzyme Assay Methods to Validate DIGE Proteomics Data
Andrew Dowd
22. Immunoblot Analysis of DIGE-based Proteomics
Martin Landsberger and Heinrich Brinkmeier
23. Immunofluorescence Microscopy for DIGE-based Proteomics
Rustam Mundegar, Margit Zweyer, and Dieter Swandulla