Preface...
Table of Contents...
Contributing Authors...
1. Identifying Sequenced Eukaryotic Genomes and Transcriptomes with diArk
Martin Kollmar and Dominic Simm
2. An Introduction to the Saccharomyces Genome Database (SGD)
Olivia W. Lang, Robert S. Nash, Sage T. Hellerstedt, Stacia R. Engel, and the SGD Project
3. Using the Candida Genome Database
Marek S. Skrzypek, Jonathan Binkley, and Gavin Sherlock
4. PomBase: The Scientific Resource for Fission Yeast
Antonia Lock, Kim Rutherford, Midori A. Harris, and Valerie Wood
5. EuPathDB: The Eukaryotic Pathogen Genomics Database Resource
Susanne Warrenfeltz, Evelina Y. Basenko, Kathryn Crouch, Omar S. Harb, Jessica C. Kissinger, David S. Roos, Achchuthan Shanmugasundram, and Fatima Silva-Franco
6. The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome DataVictoria Newman, Benjamin Moore, Helen Sparrow, and Emily Perry
7. Mouse Genome Informatics (MGI) is the International Resource for Information on the Laboratory Mouse
MeiYee Law and David R. Shaw
8. A Primer for the Rat Genome Database (RGD)Stanley J.F. Laulederkind, G. Thomas Hayman, Shur-Jen Wang, Jennifer R. Smith, Victoria Petri, Matthew J. Hoffman, Jeff De Pons, Marek A. Tutaj, Omid Ghiasvand, Monika Tutaj, Jyothi Thota, Melinda R. Dwinell, and Mary Shimoyama
9. Bovine Genome Database: Tools for Mining the Bos taurus Genome
Darren E. Hagen, Deepak R. Unni, Aditi Tayal, Gregory W. Burns, and Christine G. Elsik
10. Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database
Christina James-Zorn, Virgilio Ponferrada, Malcolm E. Fisher, Kevin Burns, Joshua Fortriede, Eri Segerdell, Kamran Karimi, Vaneet Lotay, Dong Zhou Wang, Stanley Chu, Troy Pells, Ying Wang, Peter D. Vize, and Aaron Zorn
11. Using ZFIN: Data Types, Organization and Retrieval
Ceri E. Van Slyke, Yvonne M. Bradford, Douglas G. Howe, David S. Fashena, Sridhar Ramachandran, Leyla Ruzicka, and ZFIN Staff
12. EchinoBase: Tools for Echinoderm Genome Analyses
Gregory A. Cary, Andy Cameron, and Veronia F. Hinman
13. A Multi-Omics Database for Parasitic Nematodes and Trematodes
John Martin, Rahul Tyagi, Bruce A. Rosa, and Makedonka Mitreva
14. Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes
Christian Grove, Scott Cain, Wen J. Chen, Paul Davis, Todd Harris, Kevin Howe, Ranjana Kishore, Raymond Lee, Michael Paulini, Daniela Raciti, Mary Ann Tuli, Kimberly Van Auken, Gary Williams, and the The WormBase Consortium
15. Using WormBase ParaSite: An Integrated Platform for Exploring Helminth Genomic DataBruce J. Bolt, Faye H. Rodgers, Myriam Shafie, Paul J. Kersey, Matthew Berriman, and Kevin L. Howe
16. Using FlyBase to Find Functionally Related Drosophila Genes
Alix J. Rey, Helen Attrill, Steven J. Marygold, and the FlyBase Consortium
17. Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran Insects
Christine G. Elsik, Aditi Tayal, Deepak R. Unni, Gregory W. Burns, and Darren E. Hagen
18. Navigating the i5k Workspace@NAL: A Resource for Arthropod Genomes
Monica F. Poelchau, Mei-Ju May Chen, Yu-Yu Lin, and Christopher P. Childers
