1. Defining Systems Biology: A Brief Overview of the Term and Field
Maria Victoria Schneider
2. Approaches to Modelling Gene Regulatory Networks - A Gentle Introduction Thomas Schlitt
3. Integration of Genomic Information with Biological Networks using Cytoscape
Anna Bauer-Menren
4. Visualization and Analysis of Biological Networks
Pablo Porras Millán
5. Modeling Signaling Networks with Different Formalisms: A Preview
Aidan MacNamara, David Henriques, and Julio Saez-Rodriguez
6. From a Biological Hypothesis to the Construction of a Mathematical ModelDavid Cohen, Inna Kuperstein, Emmanuel Barillot, Andrei Zinovyev and Laurence Calzone
7. Practical use of BiNoM, a Biological Network Manager Software
Eric Bonnet, Laurence Calzone, Daniel Rovera, Gautier Stoll, Emmanuel Barillot, and Andrei Zinovyev
8. Using Chemical Kinetics to Model Biochemical Pathways
Nicolas Le Novère and Lukas Endler
9. Simulation of Stochastic Kinetic
Models
Andrew Golightly and Colin S. Gillespie
10. BioModels Database: A Repository of Mathematical Models of Biological Processes
Vijayalakshmi Chelliah, Camille Laibe, and Nicolas Le Novère
11. Supporting SBML as a Model Exchange Format in Software
Applications
Sarah M. Keating and Nicolas Le Novere
12. Controlled Annotations for Systems Biology
Nick Juty, Camille Laibe, and Nicolas Le Novère
13. Bayesian Approaches for Mechanistic
Ion Channel Modelling
Ben Calderhead, Michael Epstein, Lucia Sivilotti, Mark Girolami
14. Building Models using Reactome Pathways as Templates
David Croft
15. Uniform Curation Protocol of Metazoan Signaling Pathways to Predict Novel Signaling Components
Máté Pálfy, Illés J. Farkas, Tibor Vellai, and Tamás Korcsmáros
16. Bioinformatics Workflows and Web-services in Systems Biology Made Easy for Experimentalists
Rafael C. Jimenez and Manuel Corpas
