About the Book
1. Tools in Pharmacogenomics Biomarker Identification for Cancer Patients
Francesca Scionti, Maria Teresa Di Martino, Daniele Caracciolo, Licia Pensabene, Pierosandro Tagliaferri, and Mariamena Arbitrio
2. High Performance Framework to Analyze Microarray Data
Fabrizio Marozzo and Loris Belcastro
3. Web and Cloud Computing to Analyze Microarray Data
Barbara Calabrese
4. A Microarray Analysis Technique Using a Self-Organizing Multi-Agent Approach
Agostino Forestiero, Giuseppe Papuzzo, Rosaria De Simone, and Rosa Varchera
5. Improving Analysis and Annotation of Microarray Data with Protein Interactions
Max Kotlyar, Serene W.H. Wong, Chiara Pastrello, and Igor Jurisica
6. Algorithms to Preprocess Microarray Image Data
Paolo Zaffino and Maria Francesca Spadea
7. Microarray Data Preprocessing: From Experimental Design to Differential Analysis
Antonio Federico, Laura Aliisa Saarimäki, Angela Serra, Giusy del Giudice, Pia Anneli Sofia Kinaret, Giovanni Scala, and Dario Greco
8. Supervised Methods for Biomarker Detection from Microarray Experiments
Angela Serra, Luca Cattelani, Michele Fratello, Vittorio Fortino, Pia Anneli Sofia Kinaret, and Dario Greco
9. Unsupervised Algorithms for Microarray Sample Stratification
Michele Fratello, Luca Cattelani, Antonio Federico, Alisa Pavel, Giovanni Scala, Angela Serra, and Dario Greco
10. Pathway Enrichment Analysis of Microarray Data
Chiara Pastrello, Yun Niu, and Igor Jurisica
11. Network Analysis of Microarray Data
Alisa Pavel, Angela Serra, Luca Cattelani, Antonio Federico, and Dario Greco
12. geneExpressionFromGEO: An R Package to Facilitate Data Reading from Gene Expression Omnibus (GEO)
Davide Chicco
13. Scenarios for the Integration of Microarray Gene Expression Profiles in COVID-19-Related Studies
Anna Bernasconi and Silvia Cascianelli
14. Alignment of Microarray Data
Francesco Cauteruccio
15. Integration of DNA Microarray with Clinical and Genomic Data
Francesca Scionti, Mariamena Arbitrio, Daniele Caracciolo, Licia Pensabene, Pierfrancesco Tassone, Pierosandro Tagliaferri, and Maria Teresa Di Martino
16. Clustering Methods for Microarray Data Sets
Giuseppe Agapito and Giuseppe Fedele
17. Microarray Data Analysis Protocol
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