Modeling Peptide-Protein Interactions by Ora Schueler-Furman
Home > Science & Mathematics > Biology, life sciences > Biochemistry > Proteins > Modeling Peptide-Protein Interactions
Modeling Peptide-Protein Interactions

Modeling Peptide-Protein Interactions


     0     
5
4
3
2
1



International Edition


About the Book

Preface
Table of Contents
Contributing Authors

Part I Prediction of Peptide Binding Sites

Chapter 1
The Usage of ACCLUSTER for Peptide Binding Site Prediction
Chengfei Yan, Xianjin Xu, Xiaoqin Zou

Chapter 2
Detection of Peptide-Binding Sites on Protein Surfaces using the Peptimap Server
Tanggis Bohnuud, Georges Jones, Ora Schueler-Furman, and Dima Kozakov

Chapter 3
Peptide Sub-Optimal Conformation Sampling for the Prediction of Protein-Peptide Interactions
Alexis Lamiable, Pierre Thévenet, Stephanie Eustache, Adrien Saladin, Gautier Moroy, and Pierre Tuffery

Part II Peptide Docking

Chapter 4
Template-Based Prediction of Protein-Peptide Interactions by Using GalaxyPepDock
Hasup Lee and Chaok Seok

Chapter 5
Application of the ATTRACT Coarse-Grained Docking and Atomistic Refinement for Predicting Protein-Peptide Interactions
Christina Schindler and Martin Zacharias

Chapter 6
Highly Flexible Protein-Peptide Docking Using CABS-Dock
Maciej Pawel Ciemny, Mateusz Kurcinski, Konrad Jakub Kozak, Andrzej Kolinski, and Sebastian Kmiecik

Chapter 7
AnchorDock for Blind Flexible Docking of Peptides to Proteins
Michal Slutzki, Avraham Ben-Shimon, and Masha Y. Niv

Chapter 8
Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK
Cunliang Geng, Siddarth Narasimhan, João P.G.L.M. Rodrigues, and Alexandre M.J.J. Bonvin

Chapter 9
Modeling Peptide-Protein Structure and Binding Using Monte Carlo Sampling Approaches: Rosetta FlexPepDock & FlexPepBind
Nawsad Alam and Ora Schueler-Furman

Part III Prediction and Design of Peptide Binding Specificity

Chapter 10
Flexible Backbone Methods for Predicting and Designing Peptide Specificity
Noah Ollikainen

Chapter 11
Simplifying the Design of Protein-Peptide Interaction Specificity with Sequence-Based Representations of Atomistic Models
Fan Zheng and Gevorg Grigoryan

Chapter 12
Binding Specificity Profiles from Computational Peptide Screening
Stefan Wallin

Chapter 13
Enriching Peptide Libraries for Binding Affinity and Specificity through Computationally Directed Library Design
Glenna Wink Foight, T. Scott Chen, Daniel Richman, and Amy E. Keating

Part IV Design of Inhibitory Peptides

Chapter 14
Investigating Protein-Peptide Interactions Using the Schrödinger Computational Suite
Jas Bhachoo and Thijs Beuming

Chapter 15
Identifying Loop-Mediated Protein-Protein Interactions using LoopFinder
Timothy R. Siegert, Michael Bird, and Joshua A. Kritzer

Chapter 16
Protein-Peptide Interaction Design: PepCrawler and PinaColada
Daniel Zaidman and Haim J. Wolfson

Chapter 17
Modeling and Design of Peptidomimetics to Modulate Protein-Protein Interactions
Andrew M. Watkins, Richard Bonneau, and Paramjit S. Arora


Best Sellers



Product Details
  • ISBN-13: 9781493983025
  • Publisher: Humana Press
  • Publisher Imprint: Humana Press
  • Height: 234 mm
  • No of Pages: 311
  • Series Title: Methods in Molecular Biology
  • Sub Title: Methods and Protocols
  • Width: 156 mm
  • ISBN-10: 1493983024
  • Publisher Date: 15 Jul 2018
  • Binding: Paperback
  • Language: English
  • Returnable: N
  • Spine Width: 17 mm
  • Weight: 503 gr


Similar Products

Add Photo
Add Photo

Customer Reviews

REVIEWS      0     
Click Here To Be The First to Review this Product
Modeling Peptide-Protein Interactions
Humana Press -
Modeling Peptide-Protein Interactions
Writing guidlines
We want to publish your review, so please:
  • keep your review on the product. Review's that defame author's character will be rejected.
  • Keep your review focused on the product.
  • Avoid writing about customer service. contact us instead if you have issue requiring immediate attention.
  • Refrain from mentioning competitors or the specific price you paid for the product.
  • Do not include any personally identifiable information, such as full names.

Modeling Peptide-Protein Interactions

Required fields are marked with *

Review Title*
Review
    Add Photo Add up to 6 photos
    Would you recommend this product to a friend?
    Tag this Book Read more
    Does your review contain spoilers?
    What type of reader best describes you?
    I agree to the terms & conditions
    You may receive emails regarding this submission. Any emails will include the ability to opt-out of future communications.

    CUSTOMER RATINGS AND REVIEWS AND QUESTIONS AND ANSWERS TERMS OF USE

    These Terms of Use govern your conduct associated with the Customer Ratings and Reviews and/or Questions and Answers service offered by Bookswagon (the "CRR Service").


    By submitting any content to Bookswagon, you guarantee that:
    • You are the sole author and owner of the intellectual property rights in the content;
    • All "moral rights" that you may have in such content have been voluntarily waived by you;
    • All content that you post is accurate;
    • You are at least 13 years old;
    • Use of the content you supply does not violate these Terms of Use and will not cause injury to any person or entity.
    You further agree that you may not submit any content:
    • That is known by you to be false, inaccurate or misleading;
    • That infringes any third party's copyright, patent, trademark, trade secret or other proprietary rights or rights of publicity or privacy;
    • That violates any law, statute, ordinance or regulation (including, but not limited to, those governing, consumer protection, unfair competition, anti-discrimination or false advertising);
    • That is, or may reasonably be considered to be, defamatory, libelous, hateful, racially or religiously biased or offensive, unlawfully threatening or unlawfully harassing to any individual, partnership or corporation;
    • For which you were compensated or granted any consideration by any unapproved third party;
    • That includes any information that references other websites, addresses, email addresses, contact information or phone numbers;
    • That contains any computer viruses, worms or other potentially damaging computer programs or files.
    You agree to indemnify and hold Bookswagon (and its officers, directors, agents, subsidiaries, joint ventures, employees and third-party service providers, including but not limited to Bazaarvoice, Inc.), harmless from all claims, demands, and damages (actual and consequential) of every kind and nature, known and unknown including reasonable attorneys' fees, arising out of a breach of your representations and warranties set forth above, or your violation of any law or the rights of a third party.


    For any content that you submit, you grant Bookswagon a perpetual, irrevocable, royalty-free, transferable right and license to use, copy, modify, delete in its entirety, adapt, publish, translate, create derivative works from and/or sell, transfer, and/or distribute such content and/or incorporate such content into any form, medium or technology throughout the world without compensation to you. Additionally,  Bookswagon may transfer or share any personal information that you submit with its third-party service providers, including but not limited to Bazaarvoice, Inc. in accordance with  Privacy Policy


    All content that you submit may be used at Bookswagon's sole discretion. Bookswagon reserves the right to change, condense, withhold publication, remove or delete any content on Bookswagon's website that Bookswagon deems, in its sole discretion, to violate the content guidelines or any other provision of these Terms of Use.  Bookswagon does not guarantee that you will have any recourse through Bookswagon to edit or delete any content you have submitted. Ratings and written comments are generally posted within two to four business days. However, Bookswagon reserves the right to remove or to refuse to post any submission to the extent authorized by law. You acknowledge that you, not Bookswagon, are responsible for the contents of your submission. None of the content that you submit shall be subject to any obligation of confidence on the part of Bookswagon, its agents, subsidiaries, affiliates, partners or third party service providers (including but not limited to Bazaarvoice, Inc.)and their respective directors, officers and employees.

    Accept

    New Arrivals



    Inspired by your browsing history


    Your review has been submitted!

    You've already reviewed this product!