PART I: A Road Map Toward Systems Medicine
1. Systems Medicine - Sketching The Landscape
Marc Kirschner
2. Taking Bioinformatics to Systems Medicine
Antoine H.C. Van Kampen and Perry D. Moerland
3. Systems Medicine: The Future of Medical Genomics, Healthcare and Wellness
Mansoor Saqi, Johann Pellet, Irina Roznovat, Alexander Mazein, Stéphane Ballereau, Bertrand Demeulder, and Charles Auffray
4. Next Generation Pathology
Peter Caie amd David Harrison
5. Training in Systems Approaches for the next Generation of Life Scientists and Medical Doctors
Damjana Rozman, Jure Acimovic, and Bernd Schmeck
6. Systems Medicine in Pharmaceutical Research and Development
Lars Kuepfer and Andreas Schuppert
PART II: Opinions and Persepectives
7. Systems Medicine and Infection
Ruth Bowness
8. Systems Medicine for Lung Diseases - Phenotypes and Precision Medicine in Cancer, Infection and Allergy
Bernd Schmeck, Wilhelm Bertrams, Xin Lai, and Julio Vera
9. Third-Kind Encounters In Biomedicine: Immunology Meets Mathematics and Informatics to Become Quantitative and Predictive
Martin
Eberhardt, Xin Lai, Namrata Tomar, Shailendra Gupta, Bernd Schmeck, Alexander Steinkasserer, Gerold Schuler, and Julio Vera
10. Systems Medicine In Oncology: Signaling-Networks Modeling and New Generation Decision-Support Systems
Silvio Parodi, Giuseppe Riccardi, Nicoletta Castagnino, Lorenzo Tortolina, Massimo Maffei, Gabriele Zoppoli, Alessio Nencioni, Alberto Ballestrero, and Franco Patrone
11. Neurological Diseases from a Systems Medicine Point of View
Marek Ostaszewski, Alexander Skupin, and Rudi Balling
PART III: Systems Medicine Projects and Case Studies
12. Computational Modeling of Human Metabolism and its Application to Systems Biomedicine
Maike K. Aurich and Ines Thiele
13. From Systems Understanding To Personalized Medicine - Lessons and Recommendations Based on a Multi-Disciplinary and Translational Analysis of COPD
Josep Roca, Isaac Cano, David Gomez-Cabrero, and Jesper Tegnér
14. Rna Systems Biology for Cancer: From Diagnosis to Therapy
Raheleh Amirkhah, Ali Farazmand, Olaf Wolkenhauer, and Ulf Schmitz
15. Mathematical Models Of Pluripotent Stem Cells: at the Dawn of Predictive Regenerative Medicine
Pınar Pir and Nicolas Le Novere
PART IV: Tools and M
ethodologies16.
Network Assisted Disease Classification and Biomarker DiscoverySonja Strunz, Olaf Wolkenhauer, andAlberto De La Fuente
17. Anatomy and Physiology of Multiscale Modeling and Simulation in Systems Medicine
Alexandru Mizeranschi, Derek Groen, Joris Borgdorff, Alfons G. Hoekstra, Bastien Chopard, and Werner Dubitzky
18. Mathematical and Statistical Techniques for Systems Medicine: The Wnt Signaling Pathway As A Case Study
Adam L. Mclean, Heather A. Harrington, Michael P.H. Stumpf, and Helen M. Byrne
19. Modelling and Simulation Tools: from Systems Biology to Systems Medicine
Brett G. Olivier, Maciej Swat, and Martijn J. Moné